Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRC | rs9818937 | chr3:48325281 | G/A | 5.85E-5 | 501 | 38 | 36.4 | 21.12 | KM Plot |
| KIRC | rs9882797 | chr3:122315893 | C/T | 0.000132 | 509 | 39.38 | 35.7 | 28.52 | KM Plot |
| KIRP | rs10048665 | chr2:100933085 | A/G | 0.000681 | 211 | 13.97 | 13.03 | 20.53 | KM Plot |
| KIRP | rs10074315 | chr5:178248374 | A/G | 9.37E-6 | 214 | 9.77 | 13.1 | 16.5 | KM Plot |
| KIRP | rs1008967 | chr10:26952613 | A/T | 4.66E-5 | 212 | 17.03 | 15.27 | 14.53 | KM Plot |
| KIRP | rs10133214 | chr14:52559199 | T/C | 3.26E-9 | 214 | 16.93 | 15.65 | 4.07 | KM Plot |
| KIRP | rs10140698 | chr14:52558068 | C/T | 3.26E-9 | 214 | 16.93 | 15.65 | 4.07 | KM Plot |
| KIRP | rs10140728 | chr14:52558160 | C/T | 3.26E-9 | 214 | 16.93 | 15.65 | 4.07 | KM Plot |
| KIRP | rs10158384 | chr1:41225520 | C/T | 5.12E-5 | 214 | 18.02 | 8.87 | 3.72 | KM Plot |
| KIRP | rs10158415 | chr1:89602884 | G/T | 9.99E-5 | 211 | 10 | 19.47 | 14.1 | KM Plot |
| KIRP | rs10168 | chr5:79950403 | C/T | 0.000105 | 214 | 18.65 | 14.83 | 9.77 | KM Plot |
| KIRP | rs10174145 | chr2:100932488 | T/C | 0.000681 | 211 | 13.97 | 13.03 | 20.53 | KM Plot |
| KIRP | rs10182399 | chr2:100932582 | G/C | 0.000681 | 211 | 13.97 | 13.03 | 20.53 | KM Plot |
| KIRP | rs10187875 | chr2:86430648 | A/G | 2.78E-6 | 211 | 11.43 | 13.63 | 16.73 | KM Plot |
| KIRP | rs10188107 | chr2:178120312 | T/G | 1.99E-6 | 209 | 11.43 | 14.1 | 16.47 | KM Plot |